She started all of the Huskies’ first 28 contests before sitting out the final two games of the regular season with a sprained right ankle, which she got in the Syracuse game on February 2, 2006. The next season was her breakout season. Thomas started in all 36 games as the Huskies’ shooting guard and tallied double figure points in 16 games, including three 20-plus scoring efforts. She made at least one 3-pointer in 35 of 36 games. In her junior and senior seasons, she co-captained the team with Renee Montgomery. She spent the summer prior to the start of her junior season playing for the USA Pan American Games Team, which became the first U.S. squad to capture the gold medal at the Pan American Games since 1987. In her senior season, Thomas scored her 1,000 point of her career against the Virginia Cavaliers on December 5, 2007 in a 75-45 UConn win. Nine games later, her season was cut short due to tearing her ACL and lateral meniscus against Syracuse on January 15, 2008. On January 21, 2008, against the University of North Carolina Tar Heels, Thomas was honored with her 1,000th point ball in front of a sold-out crowd at Gampel Pavilion.While sidelined with the injury during her senior year she wrote in a diary everyday and it later was made in to a book that she published called "Heart Of A Husky". She finished her UConn career